Analysis of Genetic Diversity of Indian Buffalo Breeds by DNA Markers
DOI:
https://doi.org/10.6000/1927-520X.2012.01.01.16Keywords:
Genetic diversity, buffalo bread, DNA markersAbstract
Buffalo is an important species contributing significantly to Indian economy. There is urgent need to study genetic diversity between and within breeds using appropriate set of microsatellite markers which can be further supplemented by using Genome sequencing data, phonemics and high density arrays. Animal resources are valuable assets of a country. Present buffalo breeds have gene pools of wide representation and valuable combination of genes. Genetic variability also provides the opportunity for tracing the history of populations, species, and their ancestors through DNA based markers. For the overall breed improvement and to meet future challenges there is an urgent need to characterize buffalo breeds. It is our responsibility to conserve, preserve and maintain the animal genetic diversity.
References
Cockrill WR. The Husbandry and Health of the Domestic Buffalo. Food Agric Org United Nations, Rome, Italy. 1974.
Chen YS Li XH. New evidence. Buffalo J 1989; 1: 51-5.
Di Berardino D Iannuzzi L. Chromosome banding homologies in swamp and Murrah buffalo. J Hered 1981; 72: 183-8. DOI: https://doi.org/10.1093/oxfordjournals.jhered.a109469
FAO. FAO statistical database 2009.
FAO. FAO statistical database 2008.
Turton J. The collection, storage and dissemination of information on breeds of livestock. Proc. Ist Wld Cong Gene. Appl Livestock Prod 1974: 2: 61-74.
Kumar S, Gupta J, Kumar N, et al. Genetic variation. Molecular Ecology 2006; 15: 593-600. http://dx.doi.org/10.1111/j.1365-294X.2006.02837.x DOI: https://doi.org/10.1111/j.1365-294X.2006.02837.x
ICAR. Hand Book of Animal Husbandry. Publication and Information Division, Indian Council of Agricultural Research, Krishi Anusandhan Bhawan, Pusa, New Delhi. 2002.
FAO. The State of the World’s Animal Genetic Resources for Food and Agriculture, edited by B. Rischkowsky, B. & D. Pilling. Rome 2007
(http://www.fao.org/docrep/010/a1250e/a1250e00.htm).
Hill WG, Keightley PD. Interrelations of mutation, population size, artificial and natural selection. In Proc. Second Internat. Conf. Quant. Genet. 1988; Edited by BS Weir, EJ Eisenn, MM Goodman, G.Namkoong. Sinauer, Sunderland, p 57-70.
Bruford MW, Bradley DG, Luikart G. DNA markers. Nature Reviews Genetics 2003; 4: 900-10. http://dx.doi.org/10.1038/nrg1203 DOI: https://doi.org/10.1038/nrg1203
Toro MA, Fernández J, Caballero A. Molecular characterization. Livestock Science 2009; 120: 174-95. http://dx.doi.org/10.1016/j.livsci.2008.07.003 DOI: https://doi.org/10.1016/j.livsci.2008.07.003
FAO. Draft guidelines on molecular genetic characterization of animal genetic resources, 2011. http://www.fao.org/docrep/meeting/022/am652e.pdf.
Weir BS, Cockerham CC. Estimating F-statistics. Evolution 1984; 38: 1358-70. http://dx.doi.org/10.2307/2408641 DOI: https://doi.org/10.1111/j.1558-5646.1984.tb05657.x
Excoffier L, Smouse PE, Quattiro JM. Analysis of molecular variance. Genetics 1992; 131: 479-91. DOI: https://doi.org/10.1093/genetics/131.2.479
Huson DH, Bryant D. Application of phylogenetic networks. Molecular Biology and Evolution 2006; 23: 254-67. http://dx.doi.org/10.1093/molbev/msj030 DOI: https://doi.org/10.1093/molbev/msj030
Nei M. Genetic distance. American Naturalist 1972; 106: 283-92. http://dx.doi.org/10.1086/282771 DOI: https://doi.org/10.1086/282771
Reynolds J, Weir BS, Cockerham CC. Estimation of coancestry coefficients. Genetics 1983; 105: 767-79. DOI: https://doi.org/10.1093/genetics/105.3.767
Laval G, SanCristobal M, Chevalet C. Measuring genetic distances. Genetics Selection Evolution 2002; 34: 481-507. http://dx.doi.org/10.1186/1297-9686-34-4-481 DOI: https://doi.org/10.1051/gse:2002019
Groeneveld LF, Lenstra JA, Eding H, Toro MA, Scherf B, Pilling D et al. Genetic diversity in livestock breeds. Animal Genetics 2010; 41 (Suppl. 1): 6-31. http://dx.doi.org/10.1111/j.1365-2052.2010.02038.x DOI: https://doi.org/10.1111/j.1365-2052.2010.02038.x
FAO. An integrated global programme to establish genetic relationships among the breeds of each domestic animal species. FAO Division of Animal Production and health, Report of a working group, Mimeo, 1993; pp. 32.
Makalowski W. The human genome structure and organization. Acta Biochim Pol. 2001; 48: 587-98. DOI: https://doi.org/10.18388/abp.2001_3893
Barker JSF. Conservation of livestock breeds diversity. AGRI. 1999; 25: 33-43. DOI: https://doi.org/10.1017/S1014233900005770
Welsh J, McClelland M. Fingerprinting genomes. Nucleic Acids Res 1990: 18: 24. DOI: https://doi.org/10.1093/nar/18.24.7213
Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV. DNA polymorphisms amplified. Nucleic Acids Res. 1990; 18: 6531-5. http://dx.doi.org/10.1093/nar/18.22.6531 DOI: https://doi.org/10.1093/nar/18.22.6531
Clark AG, Lanigan CMS. Prospects for Estimating Nucleotide Divergence. Mol Biol Evol 1993; 10: 1096-1111.
Bardakci F. Random Amplified Polymorphi . Turk J Biol 2001; 25: 185-96.
Aravindakshan TV, Nainar AM. Genetic variation in cattle. Indian J Dairy Sci 1998; 51: 368-74.
Saifi HW, Bhushan B, Kumar P, Patra BN, Sharma A. Genetic Identity. Asian-Aust. J. Anim. Sci. 2004; 17: 603-7. DOI: https://doi.org/10.5713/ajas.2004.603
Sodhi M, Mukesh M, Anand A, Bhatia S, Mishra BP. Assessment of Genetic Variability. Asian-Aust J Anim Sci 2006; 19: 1234-9. DOI: https://doi.org/10.5713/ajas.2006.1234
Sonika, Sangwan ML, Maan S, Kumar S, Barwar A, Dhillon S et al.. RAPD Marker Haryana Vet 2007; 46: 8-11.
Barwar A, Sangwan ML, Kumar S, Ahlawat S. Genetic Diversity . Indian J Biotech 2008; 7: 491-5.
Anand K, Sangwan ML, Kumar S, Rupinder, Gole VC. Molecular Characterizations. Haryana Vet 2009; 48: 11-3.
Martin-Burriel IE, Garcia-Muro, Zaragoza P. Genetic diversity. Anim Genet 1999; 30 (3): 177-82. DOI: https://doi.org/10.1046/j.1365-2052.1999.00437.x
Vijh RK, Mishra B, Arora R, Chaudhary P, Sharma U, Tantia MS. Comparative evaluation. Ind J Anim Sci 2005; 75: 289-96.
Shukla Soumi Yadav BR Bhattacharya TK. Characterization of Indian Markers. Asian-Aust. J Anim Sci 2006; 19: 1556-60. DOI: https://doi.org/10.5713/ajas.2006.1556
Rupinder, Sangwan ML, Barwar A. Diversity analysis in buffalo breeds using DNA markers. Published in XV Annual Convention of ISVIB & National Symposium on Recent Approaches in Veterinary Immunology and Biotechnology for Animal Health and Production held at College of Veterinary Science, CCS HAU, Hisar from Feb 26-28, 2009.
Bhuyan DK Sangwan ML Gole VC Sethi RK. Studies on DNA fingerprinting in Murrah buffaloes using Microsatellite markers. Indian J Biotech 2010; 9: 367-70.
Jakhesara SJ Rank DN Kansara JD Parikh RC Vataliya PH Solanki JV. Microsatellite DNA typing for assessment of genetic variability in the Mehsana buffalo breed of India. Buffalo Bulletin 2010; 29: 262-9.
Mishra BP, Kataria RS, Kathiravan P, Singh KP, Sadana DK, Joshi BK. Microsatellite based genetic structuring reveals unique identity of Banni among river buffaloes of Western India. Livestock Science 2010; 127: 257–61. http://dx.doi.org/10.1016/j.livsci.2009.09.011 DOI: https://doi.org/10.1016/j.livsci.2009.09.011
Dufresne C Mignotte F and Gueride, M. The presence of tandem repeats and the initiation of replication in rabbit mitochondrial DNA. European Journal of Biochemistry 1996; 235: 593-600. http://dx.doi.org/10.1111/j.1432-1033.1996.00593.x DOI: https://doi.org/10.1111/j.1432-1033.1996.00593.x
Wood NJ and Phua SH. Variation in the control region sequence of the sheep mitochondrial genome. Animal Genetics 1996; 27: 25-33. http://dx.doi.org/10.1111/j.1365-2052.1996.tb01173.x DOI: https://doi.org/10.1111/j.1365-2052.1996.tb01173.x
Lopez JV, Cevario S, O’Brien SJ. Complete nucleotide sequences. Genomics 1996; 33: 229-46. http://dx.doi.org/10.1006/geno.1996.0188 DOI: https://doi.org/10.1006/geno.1996.0188
Ajmone-Marsan P, Garcia JF, Lenstra JA. On the origin of cattle. Evolutionary Anthropology 2010: 19 (4): p.148-57. http://dx.doi.org/10.1002/evan.20267 DOI: https://doi.org/10.1002/evan.20267
Kikkawa Y, Yonekawa H, Suzuki H, Amano T. Analysis of genetic diversity. Animal Genetics 1997; 28: 195-201. http://dx.doi.org/10.1111/j.1365-2052.1997.00101.x DOI: https://doi.org/10.1111/j.1365-2052.1997.00101.x
Kumar S, Nagarajan M, Sandhu JS, Kumar N, Behl V. Phylogeography and domestication. BMC Evolut Biol 2007; 7: 1-8. http://dx.doi.org/10.1186/1471-2148-7-1 DOI: https://doi.org/10.1186/1471-2148-7-186
Petit E, Balloux F, Excoffier L. Mammalian population genetics Trends in Ecology and Evolution 2002; 17: 28-33. http://dx.doi.org/10.1016/S0169-5347(01)02356-4 DOI: https://doi.org/10.1016/S0169-5347(01)02356-4
Wheeler DL, Smith-White B, Chetvernin V, et al. Plant Physiol 2005; 138(3): 1280-8. http://dx.doi.org/10.1104/pp.104.058842 DOI: https://doi.org/10.1104/pp.104.058842
Michelizzi VN, Michelizzi MV, Dodson ZPM, et al. Water Buffalo Genome Science Comes of Age. Inter J Biol Sci 2010; 6(4): 333-49. http://dx.doi.org/10.7150/ijbs.6.333 DOI: https://doi.org/10.7150/ijbs.6.333
Tantia MS, Vijh RK, Bhasin V, et al. Whole-genome sequence. Indian J Anim Sci 2011; 81: 38-46.
Houle D, Diddahally Govindaraju R, Omholt S. Phenomics. Nat Rev Genet 2010; 11: 855-66. http://dx.doi.org/10.1038/nrg2897 DOI: https://doi.org/10.1038/nrg2897
Hood L, Heath JR, Phelps ME, Lin B. Systems biology. Science 2004; 306: 640-3. http://dx.doi.org/10.1126/science.1104635 DOI: https://doi.org/10.1126/science.1104635
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